species:   Opsin
pid:       PID1916
parent:    n_os_milR_70
paralog:   
locus:     JAAVMX010000001.1:16729615-16729750
matures:   ['UAGGUCUAAAAAAGGUAGUU', 'CUACCGCUUUAUAGCGAACCUAAA']
srr:       SRR12952902
genome:    /Users/jax/+Genomes/Fungal_genomes/Opsin.GCA_012934285.1_ASM1293428v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952902.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zhang2021-wd.SRR12952902.cram JAAVMX010000001.1:16729615-16729750

9 out of bounds
50 alignments
50 proper strand
43 stranded perfect matches

  **************************                                                                                    **********************  
UUAACUACCGCUUUAUAGCGAACCUAAAGGGCUCGAUGGAUAUCUUCCGGCUUGCUCUUUGCCUGCUUCUUAAGCGUGGCGUAUUAGUCCUUAAGGUCUUUAUCGGGCUUAUAAUAGGUCUAAAAAAGGUAGUUAG
.((((((((..(((.(((...(((((..((((((((((((.(((((..((...(((...(((((((((...))))).))))....)))))..))))).))))))))))))....)))))))).))).)))))))).
------------------------------------------------------------------------------------------------------------------UAGGUCUAAAAAAGGUAGUU-- l=20 a=41 c
----CUACCGCUUUAUAGCGAACCUAAA------------------------------------------------------------------------------------------------------------ l=24 a=0 c*
------------------------------------------------------------------------------------------------------------------UAGGUCUAAAAAAGGUAGUU-- l=20 a=41 ma
----CUACCGCUUUAUAGCGAACCUAAA------------------------------------------------------------------------------------------------------------ l=24 a=0 ma*

------------------------------------------------------------------------------------------------------------------UAGGUCUAAAAAAGGUAGUU-- l=20 a=41 (c,ma)
------------------------------------------------------------------------------------------------------------------UAGGUCUAAAAAAGGUAGgU-- l=20 a=3 
------------------------------------------------------------------------------------------------------------------UAGGUCUAAAAAAGGUgGUU-- l=20 a=3 
------------------------------------------------------------------------------------------------------------------UAGGUCUAAAAAAGGUAGcU-- l=20 a=1 
------------------------------------------------------------------------------------------------------------------UAGGUCUAAAAAAGGUAGUUA- l=21 a=2 

mb-01011
ax-1001111
ku-01
ss-111111101010
fn-111
